2024

• Deschênes, É., M. Poulin, M.-H. Brice, P. Legendre & S. Pellerin. 2024. Mosses and vascular plants show diverging diversity patterns along a latitudinal gradient in bogs and fens. Journal of Vegetation Science 35: e3249 (16 pages). http://dx.doi.org/10.1111/jvs.13249.
• Guénard, G. & P. Legendre. 2024. Spatially explicit predictions using spatial eigenvector maps. Methods in Ecology and Evolution 00 : 1–12.
  Supplementary materials containing videos.
• Legendre, P. 2024. Indicator species: computation. Pp. 533–538 in: Encyclopedia of Biodiversity, 3rd edition, Volume 5. Paulo R. Guimarães Jr. / Samuel M. Scheiner [eds.] Elsevier Ltd, Oxford, England. https://doi.org/10.1016/B978-0-12-822562-2.00103-1.
• Van Audenhaege, L., J. Sarrazin, P. Legendre, G. Perrois, M. Cannat, A. Arnaubect & M. Matabos. 2024. Monitoring ecological dynamics on complex hydrothermal structures: a novel photogrammetry approach reveals fine-scale variability of vent assemblages. Limnology and Oceanography 69: 325–338. https://doi.org/10.1002/lno.12486.
• Zhang, A, J. Chen, H. Cui, J. Wang, S. Chen, H. Gao, X. Jiang, S. Xiao, L. An & P. Legendre. 2024. Shrub alters the spatial patterns of nematode taxonomic and functional diversity on the Qinghai-Tibet Plateau. Plant and Soil 498 (13 pages). https://doi.org/10.1007/s11104-024-06698-4.

2023

• Taranu, Z.E., P. Legendre, E. Cusson & B. Pinel-Alloul. 2023. Riverscale distribution of zooplankton in the St. Lawrence River in relation to hydrological networks, hydroperiods and local environmental gradients. Hydrobiologia, 850: 4779–4800. https://doi.org/10.1007/s10750-023-05259-7. Published online 14 June 2023.

2022

• Adaïmé, M.-É., R. Pienitz, P. Legendre & D. Antoniades. 2022. Postglacial paleoenvironmental reconstruction of the Fury and Hecla Strait region (Nunavut) inferred from microfossils and geochemical proxies. Journal of Quaternary Science 37: 944-958. DOI: 10.1002/jqs.3287
• Dansereau, G, P. Legendre & T. Poisot. 2022. Evaluating ecological uniqueness over broad spatial extents using species distribution modelling. Oikos 2022: e09063. https://doi.org/10.1111/oik.09063.
• Guénard, G. & P. Legendre. 2022. Hierarchical clustering with contiguity constraint in R. Journal of Statistical Software 103 (7): 1–26. doi: 10.18637/jss.v103.i07
• Legendre, P. 2022. Coefficient of concordance. Revised version for: Encyclopedia of Research Design, 2nd edition. N. J. Salkind, ed. SAGE Publications, Inc., Los Angeles. 7 pages. https://dx.doi.org/10.4135/9781071812082.n89.
• Schmera, D., P. Legendre, T. Erõs, M. Tóth, E. Magyari, B. Baur & J. Podani. 2022. New measures for quantifying directional changes in presence-absence community data. Ecological Indicators 136: 108618. https://doi.org/10.1016/j.ecolind.2022.108618 – Supplements.

2021

• Makarenkov, V., B. Mazoure, G. Rabusseau & P. Legendre. 2021. Horizontal gene transfer and recombination analysis of SARS-CoV-2 genes helps discover its close relatives and shed light on its origin. BMC Ecology and Evolution 21: 5. https://doi.org/10.1186/s12862-020-01732-2
• Mogouong, J., P. Constant, P. Legendre & C Guertin. 2021. The phyllosphere microbiome of host trees contributes more than leaf phytochemicals to variation in the Agrilus planipennis Fairmaire gut microbiome structure. Scientific Reports 11: 15911. https://doi.org/10.1038/s41598-021-95146-9.

2020

• Brice, M.-H., S. Vissault, W. Vieira, D. Gravel, P. Legendre & M.-J. Fortin. 2020. Moderate disturbances accelerate forest transition dynamics under climate change in the temperate-boreal ecotone of eastern North America. Global Change Biology 26: 4418–4435. http://dx.doi.org/10.1111/gcb.15143.
• Laliberté, É., A. K. Schweiger & P. Legendre. 2020. Partitioning plant spectral diversity into alpha and beta components. Ecology Letters 23: 370–380. https://doi.org/10.1111/ele.13429
• Legendre, P. 2020. The development of Numerical Ecology in China, an example of international scientific cooperation. Foreword to Numerical ecology with R, 2nd Chinese edition by D. Borcard, F. Gillet & P. Legendre (translation to Chinese: J. Lai, Institute of Botany, Chinese Academy of Sciences). Higher Education Press Beijing. Publication date: 9 May 2020.
  [Chinese title of the Foreword: 前言 – 中国数字生态学的发展，国际科学合作的一个例子.]
• Madi, N., M. Vos, C. L. Murall, P. Legendre & B. J. Shapiro. 2020. Does diversity beget diversity in microbiomes? eLife 9: e58999. https://doi.org/10.7554/eLife.58999. Supplements: same DOI.
• Schmera, D., J. Podani & P. Legendre. 2020. What do beta diversity components reveal from presence-absence community data? Let us connect every indicator to an indicandum! Ecological Indicators 117: 106540. https://doi.org/10.1016/j.ecolind.2020.106540. Supplementary material.
• Taranu, Z. E., B. Pinel-Alloul & P. Legendre. 2020. Large-scale multi-trophic co-response models and environmental control of pelagic food webs in Québec lakes. Oikos 130: 377–395. (Published as Early View, 24 December 2020). https://doi.org/10.1111/oik.07685.
• Wang, J., P. Legendre, J. Soininen, C.-F. Yeh, E. Graham, J. Stegen, E. O. Casamayor, J. Zhou, J. Shen & F. Pan. 2020. Temperature drives local contributions to beta diversity in mountain streams: stochastic and deterministic processes. Global Ecology and Biogeography 29: 420–432. https://doi.org/10.1111/geb.13035.

2019

• Boyé, A., É. Thiébaut, J. Grall, P. Legendre, C. Broudin, C. Houbin, V. Le Garrec, M. Maguer, G. Droual & O. Gauthier. 2019. Trait-based approach to monitoring marine benthic data along 500 km of coastline. Diversity and Distributions 2019; 00:1–18. https://doi.org/10.1111/ddi.12987.
• Brice, M.-H., K. Cazelles, P. Legendre & M.-J. Fortin. 2019. Disturbances amplify tree community responses to climate change in the temperate-boreal ecotone. Global Ecology & Biogeography 28: 1668–1681. https://doi.org/10.1111/geb.12971
• De Cáceres, M., L. Coll, P. Legendre, R. Allen, S. Wiser, M.-J. Fortin, R. Condit & S. Hubbell. 2019. Trajectory analysis in community ecology. Ecological Monographs 00: e01350. 10.1002/ecm.1350
• Legendre, P. 2019. A temporal beta-diversity index to identify sites that have changed in exceptional ways in space-time surveys. Ecology and Evolution; 9: 3500–3514 https://doi.org/10.1002/ece3.4984.
• Legendre, P. 2019. Foreword. Pp. xi–xv in: Griffith, D. A., Y. Chun & B. Li, Foreword by P. Legendre. Spatial regression analysis using eigenvector spatial filtering. Elsevier Science BV / Academic Press, Amsterdam. ISBN 978-0-12-815043-6.
• Legendre, P. 2019. Numerical ecology. In: Encyclopedia of Ecology, 2nd edition (B. Fath, Editor-in-Chief). Volume: Earth systems and environmental sciences, pp. 487–493. Elsevier Inc., Oxford, England. https://doi.org/10.1016/B978-0-12-409548-9.10595-0
• Legendre, P. & R. Condit. 2019. Spatial and temporal analysis of beta diversity in the Barro Colorado Island forest dynamics plot, Panama. Forest Ecosystems 6: 1-11 https://doi.org/10.1186/s40663-019-0164-4.
• Martin, Y., H. Van Dyck, P. Legendre, J. Settele, O. Schweiger, A. Harpke, M. Weimers, A. Ameztegui & N. Titeux. 2019. A novel tool to assess the effect of intraspecific spatial niche variation on species distribution shifts under climate change. Global Ecology and Biogeography 29: 590–602. https://doi.org/10.1111/geb.13036.
• Pearse, W.D., P. Legendre, P.R. Peres-Neto & T.J. Davies. 2019. The interaction of phylogeny and community structure: linking the community composition and trait evolution of clades. Global Ecology & Biogeography 28: 1499–1511 https://doi.org/10.1111/geb.12938
• Souza, C. A., L. C. G. Vieira, P. Legendre, P. Carvalho, L. F. M. Velho & B. E. Beisner. 2019. Damming interacts with the flood pulse to alter zooplankton communities in an Amazonian river. Freshwater Biology 2019; 00:1–14. https://doi.org/10.1111/fwb.13284.
• Yao, J., C. Zhang, M. De Cáceres, P. Legendre & X. Zhao. 2019. Variation in compositional and structural components of community assemblage and its determinants. Journal of Vegetation Science 2019; 30: 257–268. https://doi.org/10.1111/jvs12708

2018

• Bonifácio, P., Y. Lelièvre & E. Omnes. 2018. A new species and phylogenetic insights in Hesiospina (Annelida, Hesionidae). Zootaxa 4441: 59–75. https://doi.org/10.11646/zootaxa.4441.1.3. [Description of a new species of hydrothermal polychaete, Hesiospina legendrei.]
• Brind’Amour, A., S. Mahévas, P. Legendre & L. Bellanger. 2018. Application of Moran Eigenvector Maps (MEM) to irregular sampling designs. Spatial Statistics 16: 56–68 https://doi.org/10.1016/j.spasta.2018.05.004.
• Foubert, A., F. Lecomte, P. Legendre & M. Cusson. 2018. Spatial organization of fish communities in the St. Lawrence River: a test for longitudinal gradients and spatial heterogeneities in a large river system. Hydrobiologia 809: 155-173. https://doi.org/10.1007/s10750-017-3457-z.
• Guénard, G. & P. Legendre. 2018. Bringing multivariate support to multiscale codependence analysis: assessing the drivers of community structure across spatial scales. Methods in Ecology and Evolution 9 292–304. https://doi.org/10.1111/2041-210X.12864. Appendices.
• Houlahan, J. E., D. J. Currie, K. Cottenie, G. S. Cumming, C. S. Findlay, S. D. Fuhlendorf, P. Legendre, E. H. Muldavin, D. Noble, R. Russell, R. D. Stevens, T. J. Willis & S. M. Wondzell. 2018. Negative relationships between species richness and temporal variability are common but weak in natural systems. Ecology 99: 2592–2604. https://doi.org/10.1002/ecy.2514.
• Kuczynski, L., P. Legendre & G. Grenouillet. 2018. Concomitant impacts of climate change, fragmentation and non-native species have led to reorganization of fish communities since the 1980s. Global Ecology and Biogeography 27: 213-222. https://doi.org/10.1111/geb.12690.
• Legendre, P. & D. Borcard. 2018. Box-Cox-chord transformations for community composition data prior to beta diversity analysis. Ecography 41: 1820–1824. http://dx.doi.org/10.1111/ecog.03498. Supplements: Appendices 4-5.
• Lelièvre, Y., J. Sarrazin, J. Marticorena, G. Schaal, T. Day, P. Legendre, S. Hourdez & M. Matabos. 2018a. Biodiversity and trophic ecology of hydrothermal vent fauna associated with tubeworm assemblages on the Juan de Fuca Ridge. Biogeosciences 15: 2629-2647. https://doi.org/10.5194/bg-15-2629-2018.
  • Supplementary Information.
  • Discussion.
  • Supplement to discussion.
• Lelièvre, Y., J. Sarrazin, J. Marticorena, G. Schaal, T. Day, P. Legendre, S. Hourdez & M. Matabos. 2018b. Grotto hydrothermal edifice: abundance and isotopic data from Ocean Networks Canada's Expedition 2015 and 2016: Wiring the Abyss. SEANOE (SEA scieNtific Open data Edition; Data paper). https://doi.org/10.17882/55008.
• Lelièvre, Y., M. Matabos, P. Legendre, P.-M. Sarradin & J. Sarrazin. 2018c. Long-term and high-resolution time series datasets of vent species abundance from the Grotto hydrothermal edifice (Main Endeavour Field, Juan de Fuca Ridge). SEANOE (SEA scieNtific Open data Edition; Data paper). https://doi.org/10.17882/57113.
• Mimouni, El-A., B. Pinel-Alloul, B. Beisner & P. Legendre. 2018. Summer assessment of zooplankton biodiversity and environmental control in urban waterbodies on the Island of Montréal. Ecosphere 9: e02277. http://dx.doi.org/10.1002/ecs2.2277.
• Ngor, P. B., P. Legendre, T. Oberdorff & S. Lek. 2018. Flow alterations by dams shaped fish assemblage dynamics in the complex Mekong-3S river system. Ecological Indicators 88: 103–114. https://doi.org/10.1016/j.ecolind.2018.01.023.
• Sor, R., P. Legendre & S. Lek. 2018. Uniqueness of sampling sites contributions to the total variance of macroinvertebrate communities in the Lower Mekong Basin. Ecological Indicators 84: 425–432. http://dx.doi.org/10.1016/j.ecolind.2017.08.038.

2017

• Boyé, A., P. Legendre, J. Grall & O. Gauthier. 2017. Constancy despite variability: local and regional macrofaunal diversity in intertidal seagrass beds. Journal of Sea Research 130: 107-122.
• Cuvelier, D., P. Legendre, A. Laes-Huon, P.-M. Sarradin & J. Sarrazin. 2017. Biological and environmental rhythms in (dark) deep-sea hydrothermal ecosystems. Biogeosciences, 14: 2955–2977. https://doi.org/10.5194/bg-14-2955-2017.
• Lelièvre, Y., P. Legendre, M. Matabos, S. Mihály, C. P. Arango, R. W. Lee, P.-M. Sarradin & J. Sarrazin. 2017. Astronomical and atmospheric impacts on deep-sea hydrothermal vent invertebrates. Proceedings of the Royal Society B 284: 20162123. Supplements, Open Access version.
• Lévesque, D., C. Hudon, P. James & P. Legendre. 2017. Environmental factors structuring benthic primary producers at different spatial scales in the St. Lawrence River (Canada). Aquatic Sciences 79: 345-356.
• Macnaughton, C. J., F. McLaughlin, G. Bourque, C. Senay, G. Lanthier, S. Harvey-Lavoie, P. Legendre, M. Lapointe and D. Boisclair. 2017. The effects of regional hydrologic alteration on fish community structure in regulated rivers. River Research and Applications 33: 249–257.
• Obame Engone, J.-P., P. Legendre, L. Bélanger, D. Borcard & B. S. Assame. 2017. Caractérisation de la mosaïque forestière et identification des espèces indicatrices en forêt tropicale humide d’Ipassa, Gabon. Revue Scientifique et Technique Forêt et Environnement du Bassin du Congo 9: 11-19.
• Pelletier, J., A. Siampale, P. Legendre, P. Jantz, N. Laporte & S. Goetz. 2017. Human and natural controls of the variation in aboveground tree biomass in African dry tropical forests. Ecological Applications, https://doi.org/10.1002/eap.1550. Published online, 15 June 2017. Supplements included in previous hyperlink.
• Poisot, T., C. Guéveneux-Julien, M.-J. Fortin, D. Gravel & P. Legendre. 2017. Hosts, parasites, and their interactions respond to different climatic variables. Global Ecology and Biogeography 26 : 942–951 https://doi.org/10.1111/geb.12602.
• Taranu, Z. E., I. Gregory-Eaves, R. J. Steele, M. Beaulieu & P. Legendre. 2017. Predicting microcystin concentrations in lakes and reservoirs at a continental scale: A new framework for modelling an important health risk factor. Global Ecology and Biogeography 26: 625–637. https://doi.org/10.1111/geb.12569.
• Winegardner, A. K., P. Legendre, B. E. Beisner, & I. Gregory-Eaves. 2017. Diatom diversity patterns over the past ~ 150 years across the conterminous United States: identifying mechanisms behind beta diversity. Global Ecology and Biogeography 26: 1303-1315. https://doi.org/10.1111/geb.12640.

2016

• Blanchet, F. G., P. Legendre & F. He. 2016. A new cost-effective approach to survey ecological communities. Oikos 125: 975-987. doi: 10.1111/oik.02838.
• Guénard, G., G. Lanthier, S. Harvey-Lavoie, C. J. Macnaughton, C. Senay, M. Lapointe, P. Legendre & D. Boisclair. 2016. A spatially-explicit assessment of the fish population response to flow management in a heterogeneous landscape. Ecosphere 7(5): e01252.
• Guénard, G., G. Lanthier, S. Harvey-Lavoie, C. J. Macnaughton, C. Senay, M. Lapointe, P. Legendre & D. Boisclair. 2016. Modelling habitat distributions for multiple species using phylogenetics. Ecography 39: 001-010. doi: 10.1111/ecog.02423. Supplements: Appendix.
• Lévesque, D., C. Hudon, P. James & P. Legendre. 2016. Environmental factors structuring benthic primary producers at different spatial scales in the St. Lawrence River (Canada). Aquatic Sciences (published online, August 2016). doi: 10.1007/s00027-016-0501-4.
• Macnaughton, C. J., C. Senay, I. Dolinsek, G. Bourque, A. Maheu, G. Lanthier, S. Harvey-Lavoie, J. Asselin, P. Legendre & D. Boisclair. 2016. Using guilds to assess fish community response to hydrological and thermal regimes across temperate rivers. Freshwater Biology, doi:10.1111/fwb.12815.
• Tardif, S., É. Yergeau, J. Tremblay, P. Legendre, L. G. Whyte & C. W. Greer. 2016. The willow microbiome is influenced by soil petroleum-hydrocarbon concentration with plant compartment-specific effects. Frontiers in Microbiology (accepted).

2015

• Charles-Dominique, T., C. Edelin, A. Bouchard, P. Legendre and J. Brisson. 2015. Using intra-individual variation of shrub architecture to explain population cover. Oikos 124: 707-716.
• Gaudreau, J., L. Perez et P. Legendre. 2015. Identification des variables expliquant la distribution spatiale d’oiseaux de la forêt boréale et modélisation de tendances futures : une approche multivariée. Cybergeo : Revue européenne de géographie / European Journal of Geography, document #722. doi: 10.4000/cybergeo.26969.
• Guénard, G., D. Boisclair and P. Legendre. 2015. Phylogenetics to help predict active metabolism. Ecosphere 6: art62.
• Lamy, T., P. Legendre, Y. Chancerelle, G. Siu and J. Claudet. 2015. Understanding the spatio-temporal response of coral reef fish communities to natural disturbances: insights from beta-diversity decomposition. PLoS ONE 10 : e0138696. doi:10.1371/journal.pone.0138696
• Legendre, P., M.-J. Fortin & D. Borcard. 2015. Should the Mantel test be used in spatial analysis? Methods in Ecology and Evolution 6: 1239–1247. doi: 10.1111/2041-210X.12425.
• Legendre, P. and B. Salvat. 2015. Thirty-year recovery of mollusc communities after nuclear experimentations on Fangataufa atoll (Tuamotu, French Polynesia). Proc. R. Soc. B 282: 20150750. Supplements: Appendices S1-S3.
  • Article by science writer D. Shultz published in Science/AAAS News about this paper (archived copy).
  • Article en français paru dans Tahiti-infos le 22 juillet 2015. Source: http://www.tahiti-infos.com.
  • Écoutez l'entrevue
    Entrevue de Pierre Legendre (en français) à l’émission “L’oeuf ou la poule” de CHOQ.ca, la radio Web de l’UQAM, le 17 août 2015.
• Macnaughton, C., S. Harvey-Lavoie, C. Senay, G. Lanthier, G. Bourque, P. Legendre and D. Boisclair. 2015. A comparison of electrofishing and visual surveying methods for estimating fish community structure in temperate rivers. River Research and Applications 31: 1040-1051
• Sarrazin, J., P. Legendre, F. De Busserolles, M.-C. Fabri, K. Guilini, V. N. Ivanenko, M. Morineaux, A. Vanreusel & P.-M. Sarradin. 2015. Biodiversity patterns, environmental drivers and indicator species on a high temperature hydrothermal edifice, Mid-Atlantic Ridge. Deep-Sea Research II 121: 177-192. http://dx.doi.org/10.1016/j.dsr2.2015.04.013.
• Winegardner, A.K., B.E. Beisner, P. Legendre and I. Gregory-Eaves. 2015. Are the landscape-level drivers of water column and surface sediment diatoms different? Freshwater Biology 60: 267-281.

2014

• Blanchet, F. G., P. Legendre, J. A. C. Bergeron and F. He. 2014. Consensus RDA across dissimilarity coefficients for canonical ordination of community composition data. Ecological Monographs 84: 491-511.
• Cuvelier, D., P. Legendre, A. Laes, P.-M. Sarradin and J. Sarrazin. 2014. Rhythms and community dynamics of a hydrothermal tubeworm assemblage at Main Endeavour Field – A multidisciplinary deep-sea observatory approach. PLoS ONE 9(5): e96924. doi:10.1371/journal.pone.0096924.
• Guénard, G., P. C. von der Ohe, S. C. Walker, S. Lek and P. Legendre. 2014. Using phylogenetic information and chemical properties to predict species tolerances to pesticides. Proc. R. Soc. B 281: 20133239.
• Legendre, P. 2014. Interpreting the replacement and richness difference components of beta diversity. Global Ecology and Biogeography 23: 1324-1334. DOI: 10.1111/geb.12207. Supplements: Appendices S1-S6.
• Legendre, P. and O. Gauthier. 2014. Statistical methods for temporal and space-time analysis of community composition data. Proceedings of the Royal Society B - Biological Sciences 281: 20132728. Download also the eLetter. Supplements: Appendices S1-S4, Appendix S5.
• Makarenkov, V., A. Boc & P. Legendre. 2014. A new algorithm for inferring hybridization events based on the detection of horizontal gene transfers. Pp. 273–293 in: F. Aleskerov, B. Goldengorin and P. M. Pardalos [eds.] Clusters, Orders, and Trees: Methods and Applications. Springer Optimization and Its Applications, 92. Springer, New York.
• Murtagh, F. and P. Legendre. 2014. Ward’s hierarchical agglomerative clustering method: which algorithms implement Ward’s criterion? Journal of Classification 31: 274-295. doi: 10.1007/s00357-014-9161-z
• Sarrazin, J., D. Cuvelier, L. Peton, P. Legendre and P. M. Sarradin. 2014. High-resolution dynamics of a deep-sea hydrothermal mussel assemblage monitored by the EMSO-Açores MoMAR observatory. Deep-Sea Research I 90: 62-75 (published online, 10 May 2014; http://dx.doi.org/10.1016/j.dsr.2014.04.004).
• Tremblay, R., R. Pienitz and P. Legendre. 2014. Reconstructing phosphorus levels using models based on the modern diatom assemblages of 55 lakes in southern Quebec. Canadian Journal of Fisheries and Aquatic Sciences 71: 887-914.
• Voisin, G., G. Bouvet, P. Legendre, A. Dagenais, C. Massé and Y. Berthiaume. 2014. Oxidative stress modulates the expression of genes involved in cell survival in ΔF508 cystic fibrosis airway epithelial cells. Physiological Genomics 46: 634-646. doi:10.1152/physiolgenomics.00003.2014.

2013

• Boc, A., P. Legendre and V. Makarenkov. 2013. An efficient algorithm for the detection and classification of horizontal gene transfer events and identification of mosaic genes. Pp. 253-260 in: B. Lausen, D. Van den Poel and A. Ultsch (eds) Algorithms from and for Nature and Life: Classification and data analysis. Springer International Publishing, Switzerland.
• De Cáceres, M., P. Legendre and F. He. 2013. Dissimilarity measurements and the size structure of ecological communities. Methods in Ecology and Evolution 4: 1167-1177.
• Genard, B., B. Marie, E. Loumaye, B. Knoops, P. Legendre, F. Zal and J.-F. Rees. 2013. Living in a hot redox soup: antioxidant defences of the hydrothermal worm, Alvinella pompejana. Aquatic Biology 18: 217-228.
• Guénard, G., P. Legendre and P. R. Peres-Neto. 2013. Phylogenetic eigenvector maps (PEM): a framework to model and predict species traits. Methods in Ecology and Evolution 4: 1120-1131.
• Lanthier, G., D. Boisclair, G. Bourque, P. Legendre, M. Lapointe, and B. Angers. 2013. Optimization of temporal versus spatial replication in the development of habitat use models to explain among-reach variations of fish density estimates in rivers. Canadian Journal of Fisheries and Aquatic Sciences 70: 600-609.
• Legendre, P. 2013. Indicator species: computation. Pp. 264-268 in : Encyclopedia of Biodiversity, 2nd edition. Simon Levin (ed.) Academic Press, Waltham, MA, USA.
• Legendre, P. and M. De Cáceres. 2013. Beta diversity as the variance of community data: dissimilarity coefficients and partitioning. Ecology Letters 16: 951-963.
• Mines, C., A. Ghadouani, N. D. Yan, P. Legendre and G. N. Ivey. 2013. Examining shifts in zooplankton community variability following biological invasion. Limnology & Oceanography 58: 399-408.
• Pinel-Alloul, B., A. André, P. Legendre, J. Cardille, K. Patalas and A. Salki. 2013. Large-scale geographic patterns of diversity and community structure of pelagic crustacean zooplankton in Canadian lakes. Global Ecology and Biogeography 22: 784-795.
• Rogic, A., N. Tessier, P. Legendre, F.-J. Lapointe and V. Millien. 2013. Genetic structure of the white-footed mouse in the context of the emergence of Lyme disease in southern Québec. Ecology and Evolution (Article first published online: 3 June 2013 | DOI: 10.1002/ece3.620).
• Sork, V. L., S. N. Aitken, R. J. Dyer, A. J. Eckert, P. Legendre and D. B. Neale. 2013. Putting the landscape into the genomics of forest trees: Approaches for understanding local adaptation and population responses to a changing climate. Tree Genetics & Genomes 9: 901-911.
• Terrier, A., M. Girardin, C. Périé, P. Legendre and Y. Bergeron. 2013. Potential changes in forest composition could reduce impacts of climate change on boreal wildfires. Ecological Applications 23: 21-35.

2012

• Bertolo, A., G. F. Blanchet, P. Magnan, P. Brodeur, M. Mingelbier, and P. Legendre. 2012. Inferring processes from spatial patterns: the role of directional and non–directional forces in shaping fish larvae distribution in a freshwater lake system. PLoS ONE 7: e50239. doi:10.1371.
• Beltrán, Y., C. M. Centeno, F. García-Oliva, P. Legendre & L. I. Falcón. 2012. N2 fixation rates and associated diversity (nifH) of microbialite and mat-forming consortia from different aquatic environments in Mexico. Aquatic Microbial Ecology 67: 15-24.
• Borcard, D. and P. Legendre. 2012. Is the Mantel correlogram powerful enough to be useful in ecological analysis? A simulation study. Ecology 93: 1473-1481.
• Centeno, C. M., P. Legendre, Y. Beltrán, R. J. Alcántara-Hernández, U. E. Lidström, M N. Ashby, and L. I. Falcón. 2012. Microbialite genetic diversity and composition relate to environmental variables. FEMS Microbiology Ecology 82: 724-735.
• De Cáceres, M., P. Legendre, R. Valencia, M. Cao, L.-W. Chang, G. Chuyong, R. Condit, Z. Hao, C.-F. Hsieh, S. Hubbell, D. Kenfack, K. Ma, X. Mi, N. Supardi Noor, A. R. Kassim, H. Ren, S.-H. Su, I-F. Sun, D. Thomas, W. Ye and F. He. 2012. The variation of tree beta diversity across a global network of forest plots. Global Ecology and Biogeography 21: 1191-1202 (first published online: http://dx.doi.org/10.1111/j.1466-8238.2012.00770.x).
• De Cáceres, M., P. Legendre, S. Wiser and L. Brotons. 2012. Using species combinations in indicator value analyses. Methods in Ecology and Evolution (first published online: http://dx.doi.org/10.1111/j.2041-210X.2012.00246.x).
• Dray, S., R. Pélissier, P. Couteron, M.-J. Fortin, P. Legendre, P. R. Peres-Neto, E. Bellier, R. Bivand, F. G. Blanchet, M. De Cáceres, A.-B. Dufour, E. Heegaard, T. Jombart, F. Munoz, J. Oksanen, J. Thioulouse and H. H. Wagner. 2012. Community ecology in the age of multivariate multiscale spatial analysis. Ecological Monographs 82: 257-275.
• Kopp, D., Y. Bouchon-Navaro, M. Louis, P. Legendre and C. Bouchon. 2012. Spatial and temporal variation in a Caribbean herbivorous fish assemblage. Journal of Coastal Research 28: 63-72.
• Lacoursière-Roussel, A., D. G. Bock, M. E. Cristescu, F. Guichard, P. Girard, P. Legendre and C. W. McKindsey. 2012. Disentangling invasion processes in a dynamic shipping–boating network. Molecular Ecology 21: 4227-4241.
• Legendre, P. & H. J. B. Birks. 2012. Clustering and partitioning. Chapter 7, pp. 167-200 in: Tracking Environmental Change using Lake Sediments, Volume 5: Data handling and numerical techniques. H. J. B. Birks, A. F. Lotter, S. Juggins and J. P. Smol [eds.]. Springer, Dordrecht, The Netherlands.
• Legendre, P. & H. J. B. Birks. 2012. From classical to canonical ordination. Chapter 8, pp. 201-248 in: Tracking Environmental Change using Lake Sediments, Volume 5: Data handling and numerical techniques. H. J. B. Birks, A. F. Lotter, S. Juggins and J. P. Smol [eds.]. Springer, Dordrecht, The Netherlands.
• Legendre, P., D. Borcard and D. W. Roberts. 2012. Variation partitioning involving orthogonal spatial eigenfunction submodels. Ecology 93: 1234-1240.
• Manel, S., F. Gugerli, W. Thuiller, N. Alvarez, P. Legendre, R. Holderegger, L. Gielly and P. Taberlet. 2012. Broad-scale adaptive genetic variation in Alpine plants is mainly driven by temperature and precipitation. Molecular Ecology 21: 3729-3738.
• Ouellette, M.-H., P. Legendre and D. Borcard. 2012. Cascade multivariate regression tree: a novel approach for modelling nested explanatory sets. Methods in Ecology & Evolution 3:234-244.
• Sharma, S., P. Legendre, D. Boisclair and S. Gauthier. 2012. Effects of spatial scale and choice of statistical model (linear versus tree-based) on determining species-habitat relationships. Canadian Journal of Fisheries and Aquatic Sciences 69: 2095-2111.
• Walker, S., G. Guénard and P. Legendre. 2012. Multiple-table data in R with the multitable package. Journal of Statistical Software 51: 1-38.

2011

• Bellchambers, L. M., J. J. Meeuwig, S. N. Evans, and P. Legendre. 2011. Modelling habitat associations of 14 species of holoturians from an unfished coral atoll: implications for fisheries management. Aquatic Biology 14: 57-66.
• Bellchambers, L. M., J. J. Meeuwig, S. N. Evans, and P. Legendre. 2011. Modelling habitat associations of the common spider conch in the Cocos (Keeling) Islands. Marine Ecology Progress Series 432: 83-90.
• Blanchet, F. G., P. Legendre, R. Maranger, D. Monti and P. Pepin. 2011. Modelling the effect of directional spatial ecological processes at different scales. Oecologia 166: 357-368.
• Brind’Amour, A., D. Boisclair, S. Dray and P. Legendre. 2011. Relationships between species feeding traits and environmental conditions in fish communities: a three-matrix approach. Ecological Applications 21: 363-377. 
• Campbell, V., P. Legendre, and F.-J. Lapointe. 2011. The performance of the Congruence Among Distance Matrices (CADM) test in phylogenetic analysis. BMC Evolutionary Biology 11: 64. http://www.biomedcentral.com/1471-2148/11/64. 
• Clua, E., N. Buray, P. Legendre, J. Mourier and S. Planes. 2011. Business partner or simple catch? The economic value of the sicklefin lemon shark in French Polynesia. Marine and Freshwater Research 62: 764-770. (Special issue of MFR for the proceedings of the Sharks International Conference, Cairns, Australia, June 6-11, 2010).
• Coat, S., D. Monti, P. Legendre, C. Bouchon, F. Massat and G. Lepoint. 2011. Organochlorine pollution in tropical rivers (Guadeloupe): role of ecological factors in food web bioaccumulation. Environmental Pollution 159: 1692-1701.
• De Cáceres, M., D. Sol, O. Lapiedra and P. Legendre. 2011. A framework for estimating niche metrics using the resemblance between qualitative resources. Oikos 120: 1341-1350.
• Declerck, S. A. J., J. S. Coronel, P. Legendre and L. Brendonck. 2011. Scale dependency of processes structuring metacommunities of cladocerans in temporary pools of High-Andes wetlands. Ecography 34: 296-305.
• Guénard, G., P. C. von der Ohe, D. de Zwart, P. Legendre and S. Lek. 2011. Using phylogenetic information to predict species tolerances to toxic chemicals. Ecological Applications 21: 3178-3190.
• Legendre, P., J. Oksanen and C. J. F. ter Braak. 2011. Testing the significance of canonical axes in redundancy analysis. Methods in Ecology & Evolution 2: 269-277. (Zipped folder of R functions.)
• Matabos M., S. Plouviez, S. Hourdez, D. Desbruyère, P. Legendre, A. Warén, D. Jollivet, and E. Thiébaut. 2011. Faunal changes and geographic crypticism indicate the occurrence of a biogeographic transition zone along the southern East Pacific Rise. Journal of Biogeography 38: 575-594. 
• Sharma, S., P. Legendre, M. De Cáceres and D. Boisclair. 2011. The role of environmental and spatial processes in structuring native and non-native fish communities across thousands of lakes. Ecography 34: 762-771. 

2010

• Ali, G., A. Roy and P. Legendre. 2010. Spatial relationships between soil moisture patterns and topographic variables at multiple scales in a humid temperate forested catchment. Water Resources Research 46, W10526, doi:10.1029/2009WR008804. 
• Clua, E., N. Buray, P. Legendre, J. Mourier and S. Planes. 2010a. Behavioural response of sicklefin lemon sharks Negaprion acutidens to underwater feeding for ecotourism purposes. Marine Ecology Progress Series 414: 257-266. 
• Clua, E., N. Buray, P. Legendre, J. Mourier and S. Planes. 2010b. Effects of provisioning on shark behaviour: Reply to Brunnschweiler & McKenzie (2010). Marine Ecology Progress Series 420 : 285-288.
  (Le fichier pdf contient deux articles: Brunnschweiler and McKenzie 2010, suivi de Clua et al. 2010b.)
  (The pdf file contains two papers: Brunnschweiler and McKenzie 2010, followed by Clua et al. 2010b.)
• De Cáceres, M., P. Legendre and M. Moretti. 2010. Improving indicator species analysis by combining groups of sites. Oikos 119: 1674-1684.
• Epperson, B. K., B. H. McRae, K. Scribner, S. A. Cushman, M. S. Rosenberg, M.-J. Fortin, P. M.A. James, M. Murphy, S. Manel, P. Legendre, and M. R. T. Dale. 2010. Utility of computer simulations in landscape genetics. Molecular Ecology 19: 3549-3564.
• Guénard, G., P. Legendre, D. Boisclair, and M. Bilodeau. 2010. Multiscale codependence analysis: an integrated approach to analyze relationships across scales. Ecology 91: 2952-2964.
• Laliberté, E., and P. Legendre. 2010. A distance-based framework for measuring functional diversity from multiple traits. Ecology 91(1): 299-305.
• Legendre, P. 2010. Coefficient of concordance. Pp. 164-169 in: Encyclopedia of Research Design, Vol. 1. N. J. Salkind, ed. SAGE Publications, Inc., Los Angeles.
• Legendre, P., M. De Cáceres, and D. Borcard. 2010. Community surveys through space and time: testing the space-time interaction in the absence of replication. Ecology 91(1): 262-272 . Appendices and Supplement to this paper.
• Legendre, P. and M.-J. Fortin. 2010. Comparison of the Mantel test and alternative approaches for detecting complex multivariate relationships in the spatial analysis of genetic data. Molecular Ecology Resources 10: 831-844. - Appendices to this paper.
• Makarenkov, V., J. Xie, A. Boc, P. Peres-Neto, F.-J. Lapointe and P. Legendre. 2010. Weighted bootstrapping: a correction method for assessing the robustness of phylogenetic trees. BMC Evolutionary Biology 10: 250. doi:10.1186/1471-2148-10-250.
• Manel, S, B. N. Poncet, P. Legendre, F. Gugerli and R. Holderegger. 2010. Common factors drive adaptive genetic variation at different spatial scales in Arabis alpina. Molecular Ecology 19: 3824-3835.
• Moretti, M., M. De Cáceres, C. Pradella, M. K. Obrist, B. Wermelinger, P. Legendre and P. Duelli. 2010. Fire-induced taxonomic and functional changes in saproxylic beetle communities in fire sensitive regions. Ecography 33: 760-771.
• Noorduijn, S. L., A. Ghadouani, R. Vogwill, K. R. J. Smettem, and P. Legendre. 2010. Water table response to an experimental alley farming trial: dissecting the spatial and temporal structure of the data. Ecological Applications 20: 1704-1720.
• Peres-Neto, P. R. and P. Legendre. 2010. Estimating and controlling for spatial structure in the study of ecological communities. Global Ecology and Biogeography 19: 174-184.
• Roy, M. L., A. G. Roy, and P. Legendre. 2010. The relations between ‘standard’ fluvial habitat variables and turbulent flow at multiple scales in morphological units of a gravel-bed river. River Research and Applications 26: 439-455.
• Sattler, T., D. Borcard, R. Arlettaz, F. Bontadina, P. Legendre, M. Obrist, and M. Moretti. 2010. Spider, bee and bird communities in cities are shaped by environmental control and high stochasticity. Ecology 91: 3343-3353.

2009

• Aubin, I., M.-H. Ouellette, P. Legendre, C. Messier and A. Bouchard. 2009. Comparison of two plant functional approaches to evaluate natural restoration along an old-field - deciduous forest chronosequence. Journal of Vegetation Science 20: 185-198.
• Bachraty, C., P. Legendre and D. Desbruyères. 2009. Biogeographic relationships among deep-sea hydrothermal vent faunas at global scale. Deep-Sea Research I 56(8): 1371-1378.
• Boutet, I., A. Tanguy, D. Le Guen, P. Piccino, S. Hourdez, P. Legendre, and D. Jollivet. 2009. Global depression in gene expression as a response to rapid thermal changes in vent mussels. Proceedings of the Royal Society B 276 : 3071-3079.
• Campbell, V., P. Legendre and F.-J. Lapointe. 2009. Assessing congruence among ultrametric distance matrices. Journal of Classification 26: 103-117.
• De Cáceres, M., and P. Legendre. 2009. Associations between species and groups of sites: indices and statistical inference. Ecology 90: 3566-3574
• Laliberté, E., A. Paquette, P. Legendre, and A. Bouchard. 2009. Assessing the scale-specific importance of niches and other spatial processes on beta diversity: a case study from a temperate forest. Oecologia 159: 377-388.
• Legendre, P. and Y. Desdevises. 2009. Independent contrasts and regression through the origin. Journal of Theoretical Biology 259: 727-743.
• Legendre, P., X. Mi, H. Ren, K. Ma, M. Yu, I. F. Sun, and F. He. 2009. Partitioning beta diversity in a subtropical broad-leaved forest of China. Ecology 90: 663-674.
• Monti, D. and P. Legendre. 2009. Shifts between biotic and physical driving forces of species organization under natural disturbance regimes. Canadian Journal of Fisheries and Aquatic Sciences 66 (8): 1282-1293.

2008

• Arias-González, J. E., P. Legendre, and F. A. Rodríguez-Zaragoza. 2008. Scaling up beta diversity on Caribbean coral reefs. Journal of Experimental Marine Biology and Ecology 366 : 28-36.
• Blanchet F. G., P. Legendre, and D. Borcard. 2008. Forward selection of explanatory variables. Ecology 89: 2623-2632.
• Blanchet, F.G., P. Legendre, and D. Borcard. 2008. Modelling directional spatial processes in ecological data. Ecological Modelling 215: 325-336.
• Clua, E. and P. Legendre. 2008. Shifting dominance among Scarid species on reefs representing a gradient of fishing pressure. Aquatic Living Resources 21:339-348.
• Cubo, J., P. Legendre, A. de Ricqlès, L. Montes, E. de Margerie, J. Castanet, and Y. Desdevises. 2008. Phylogenetic, functional, and structural components of variation in bone growth rate of amniotes. Evolution & Development 10: 217-227.
• De Caceres, M., and P. Legendre. 2008. Beals smoothing revisited. Oecologia 156: 657-669.
• Dray, S. and P. Legendre. 2008. Testing the species traits-environment relationships: the fourth-corner problem revisited. Ecology 89: 3400-3412.
• Escobar-Briones, E. G., C. Diaz, and P. Legendre. 2008a. Meiofaunal community structure of the deep-sea Gulf of Mexico: variability due to sorting methods. Deep-Sea Research 1I: Topical Studies in Oceanography 55: 2627-2633.
• Escobar-Briones, E. G., A. Gaytán-Caballero, & P. Legendre. 2008b. Epibenthic megacrustaceans from the continental margin, slope and abyssal plain of the Southwestern Gulf of Mexico: factors responsible for variability in species composition and diversity. Deep-Sea Research II: Topical Studies in Oceanography 55: 2667-2678.
• Escobar-Briones, E., E. L. Estrada Santillán, & P. Legendre. 2008c. Macrofaunal density and biomass in the Campeche Canyon, Southern Gulf of Mexico. Deep Sea Research II: Topical Studies in Oceanography 55: 2679-2686.
• Houlahan, J. E., K. Cottenie, G. S. Cumming, D. J. Currie, C. S. Findlay, U. Gaedke, P. Legendre, J. J. Magnuson, B. H. McArdle, R. D. Stevens, I. P. Woiwod, & S. M. Wondzell. 2008. The utility of covariances: a response to Ranta et al. Oikos 117: 1912-1913.
• Jones, M. M., H. Tuomisto, D. Borcard, P. Legendre, D. B. Clark, and P. C. Olivas. 2008. Explaining variation in tropical plant community composition: influence of environmental and spatial data quality. Oecologia 155: 593-604.
• Léonard, R., P. Legendre, M. Jean and A. Bouchard. 2008. Spatial patterns of submerged macrophyte communities in a fluvio-lacustrine section of the St. Lawrence River: a landscape ecology perspective. Landscape Ecology 23 : 91-105.
• Legendre, P. 2008. Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis. Journal of Plant Ecology (English version) 1: 3-8. (Published by Oxford University Press on behalf of the Institute of Botany, Chinese Academy of Science.)
• Legendre, P., D. Borcard, & P. R. Peres-Neto. 2008. Analyzing or explaining beta diversity? Comment. Ecology 89: 3238-3244.
• Pélissier, R., P. Couteron, and S. Dray. 2008. Analyzing or explaining beta diversity: Comment. Ecology 89: 3227-3232.
Laliberté, É. 2008.Analyzing or explaining beta diversity: Comment. Ecology 89: 3232-3237. Legendre, P., D. Borcard, and P. R. Peres-Neto. 2008. Analyzing or explaining beta diversity: Comment. Ecology 89: 3238-3244.
• Rhainds, M., J. Brodeur, D. Borcard, & P. Legendre. 2008. Toward management guidelines for soybean aphid, Aphis glycine, in Québec. II. Spatial distribution of aphid populations in commercial soybean fields. Canadian Entomologist 140: 219-234.
• Tuomisto, H., and K. Ruokolainen. 2008. Analyzing or explaining beta diversity: Reply. Ecology 89: 3244-3256.
  (La discussion sur “Analyzing or explaining beta diversity” comprend quatre articles dans le même fichier)
  (The “Analyzing or explaining beta diversity” discussion comprises four papers in the same file.)

2007

• Caraguel, C. G. B., C. J. O’Kelly, P. Legendre, S. Frasca Jr., R. J. Gast, B. M. Després, R. J. Cawthorn & S. J. Greenwood. 2007. Microheterogeneity and coevolution: an examination of rDNA sequence characteristics in Neoparamoeba pemaquidensis and its prokinetoplastid endosymbiont. Journal of Eukaryotic Microbiology 54: 418-426.
• Houlahan, J. E., D. J. Currie, K. Cottenie, G. S. Cumming, S. K. M. Ernest, C. S. Findlay, S. D. Fuhlendorf, U. Gaedke, P. Legendre, J. J. Magnuson, B. H. McArdle, E. H. Muldavin, D. Noble, R. Russell, R. D. Stevens, T. J. Willis, I. P. Woiwod, and S. M. Wondzell. 2007. Compensatory dynamics are rare in natural ecological communities. Proceedings of the National Academy of Science (USA) 104: 3273-3277.
• Lacey, R. W. J., P. Legendre and A. Roy. 2007. Spatial-scale partitioning of in situ turbulent flow data over a pebble cluster in a gravel-bed river. Water Resources Research 43, W03416, doi:10.1029/2006WR005044
• Legendre, P. 2007. Studying beta diversity: ecological variation partitioning by multiple regression and canonical analysis. Journal of Plant Ecology (Chinese version), formerly Acta Phytoecologica Sinica 31 : 976-981.
• Michel, N., F. Burel, P. Legendre and A. Butet. 2007. Role of habitat and landscape in structuring small mammal assemblages in hedgerow networks of contrasted farming landscapes in Brittany, France. Landscape Ecology 22, 1241-1253.
• Paquette, A., E. Laliberté, A. Bouchard, S. de Blois, P. Legendre and J. Brisson. 2007. Lac Croche understory vegetation data set (1998-2006). Ecology 88: 3209. (“Data paper”)

2006

• Clua, E., P. Legendre, L. Vigliola, F. Magron, M. Kulbicki, S. Sarramegna, P. Labrosse and R. Galzin. 2006. Medium-scale approach (MSA) for improved assessment of coral reef fish habitat. Journal of Experimental Marine Biology and Ecology 333: 219-230.
• Dray, S., P. Legendre and P. Peres-Neto. 2006. Spatial modelling: a comprehensive framework for principal coordinate analysis of neighbor matrices (PCNM). Ecological Modelling 196: 483-493.
• Durand, S., P. Legendre and S. K. Juniper. 2006. Sonar backscatter differentiation of dominant macrohabitat types in a hydrothermal vent field. Ecological Applications 16: 1421-1435.
• Legendre, P. & D. Borcard. 2006. Quelles sont les échelles spatiales importantes dans un écosystème ? Chapitre 19 (p. 425-442) in: J.-J. Droesbeke, M. Lejeune et G. Saporta (éds), Analyse statistique de données spatiales. Editions TECHNIP, Paris. (Manuscrit du chapitre en format PDF / Chapter manuscript in PDF format.)
• Makarenkov, V., D. Kevorkov and P. Legendre. 2006. Phylogenetic network construction approaches. Pp. 61-97 in: Applied Mycology and Biotechnology, Volume 6: Bioinformatics. Elsevier Science B. V., Amsterdam. 
• Passy, S. I. and P. Legendre. 2006. Power law relationships among hierarchical taxonomic categories in algae reveal a new paradox of the plankton. Global Ecology and Biogeography 15: 528-535.
• Passy, S. I. and P. Legendre. 2006. Are algal communities driven toward maximum biomass? Proceedings of the Royal Society B: Biological Sciences 273: 2667-2674.
• Peres-Neto, P.R., P. Legendre, S. Dray, and D. Borcard. 2006. Variation partitioning of species data matrices: estimation and comparison of fractions. Ecology 87: 2614-2625
• Tall, L., A. Cattaneo, L. Cloutier, S. Dray and P. Legendre. 2006. Resource partitioning in a grazer guild feeding on a multilayer diatom mat. Journal of the North American Benthological Society 25: 800-810.

2005

• Blanchet, G. et P. Legendre. 2005. Analyse spatiale de la communauté végétale de la portion nord du désert du Chihuahua. P. 63-66 in: Makarenkov, V., G. Cucumel et F.-J. Lapointe (éds) Comptes-rendus des 12èmes Rencontres de la Société Francophone de Classification, Université du Québec à Montréal, 30 mai - 1er juin 2005.
• Bouchon-Navaro, Y., C. Bouchon, M. Louis and P. Legendre. 2005. Biogeographic patterns of coastal fish assemblages in the West Indies. Journal of Experimental Marine Biology and Ecology 315: 31-47.
• Brind’Amour, A., D. Boisclair, P. Legendre and D. Borcard. 2005. Multiscale spatial distribution of a littoral fish community in relation to environmental variables. Limnology and Oceanography 50: 465-479.
• Durand, S. et P. Legendre. 2005. Classification et détection d’habitats benthiques à l’aide de signatures sonores. P. 130-134 in: Makarenkov, V., G. Cucumel et F.-J. Lapointe (éds) Comptes-rendus des 12èmes Rencontres de la Société Francophone de Classification, Université du Québec à Montréal, 30 mai - 1er juin 2005.
• Hooper, E., P. Legendre and R. Condit. 2005. Barriers to forest regeneration of deforested and abandoned land in Panama. Journal of Applied Ecology 42: 1165-1174.
• Legendre, P. 2005. Species associations: the Kendall coefficient of concordance revisited. Journal of Agricultural, Biological and Environmental Statistics 10: 226-245.
• Legendre, P., D. Borcard and P. R. Peres-Neto. 2005. Analyzing beta diversity: partitioning the spatial variation of community composition data. Ecological Monographs 75: 435-450. ("Concepts & Synthesis" paper.)
• Legendre, P. et F.-J. Lapointe. 2005. Congruence entre matrices de distance. P. 178-181 in: Makarenkov, V., G. Cucumel et F.-J. Lapointe (éds) Comptes-rendus des 12èmes Rencontres de la Société Francophone de Classification, Université du Québec à Montréal, 30 mai - 1er juin 2005.
• Núñez-Lara, E., E. Arias-González and P. Legendre. 2005. Spatial patterns of Yucatan reef fish communities: testing models using a multi-scale survey design. J. Exp. Mar. Biol. Ecol. 324: 157-169.
• Ouellette, M.-H., J.-L. DesGranges, P. Legendre et D. Borcard. 2005. L’arbre de régression multivariable : classification d’assemblages d’oiseaux fondée sur les caractéristiques de leur habitat. P. 229-232 in: Makarenkov, V., G. Cucumel et F.-J. Lapointe (éds) Comptes-rendus des 12èmes Rencontres de la Société Francophone de Classification, Université du Québec à Montréal, 30 mai - 1er juin 2005.

2004

• Makarenkov, V., P. Legendre & Y. Desdevises. 2004. Modelling phylogenetic relationships using reticulated networks. Zoologica Scripta 33: 89-96.
• Borcard, D., P. Legendre, C. Avois-Jacquet & H. Tuomisto. 2004. Dissecting the spatial structure of ecological data at multiple scales. Ecology 85(7): 1826-1832 (Statistical report).
• Makarenkov, V. & P. Legendre. 2004. From a phylogenetic tree to a reticulated network. Journal of Computational Biology 11(1): 195-212.
• Legendre, P., M. R. T. Dale, M.-J. Fortin, P. Casgrain and J. Gurevitch. 2004. Effects of spatial structures on the results of field experiments. Ecology 85: 3202-3214.
• Legendre, P. & F.-J. Lapointe. 2004. Assessing the congruence among distance matrices: single malt Scotch whiskies revisited. Australian and New Zealand Journal of Statistics 46: 615-629.
• Hewitt, J. E., S. F. Thrush, P. Legendre, G. A. Funnell, and M. Morrison. 2004. Mapping of marine soft-sediment communities: integrated sampling for ecological interpretation. Ecological Applications 14(4):1203-1216.
• Hooper, E.R., P. Legendre and R. Condit. 2004. Factors affecting community composition of forest regeneration in deforested, abandoned land in Panama. Ecology 85: 3313-3326

2003

• Desdevises, Y., P. Legendre, L. Azouzi and S. Morand. 2003. Quantifying phylogenetically-structured environmental variation. Evolution 57: 2647-2652.
• Legendre, P. 2003. Reply to the comment by Preston and Kirlin on “Acoustic seabed classification: improved statistical method”. Canadian Journal of Fisheries and Aquatic Sciences 60: 1301-1305.
  (La discussion sur “Acoustic seabed classification” comprend trois articles.)
  (The discussion on “Acoustic seabed classification” is made of three papers.)
• Makarenkov, V. & P. Legendre. 2003. Optimal variable selection for ultrametric and additive tree clustering and K-means partitioning. Pp. 262-269 in: Proceedings of the 2nd International Conference on Control Sciences of the Institute of Control Sciences, RAN, Moscow, Russia, vol. 1.

2002

• Borcard, D. 2002. Régression et corrélation multiples et partielles: r² partiel, contribution et fraction (a) (version française) Partial r², contribution and fraction (a) (English version). Département de sciences biologiques, Université de Montréal. 8 pages.
• Borcard, D. and P. Legendre. 2002. All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecological Modelling 153: 51-68.
• Dale, M., P. Dixon, M.-J. Fortin, P. Legendre, D. Myers and M. Rosenberg. 2002. Conceptual and mathematical relationships among methods for spatial analysis. Ecography 25: 558-577.
  (PDFs of all papers of the Ecography special section “Integrating the statistical analysis of spatial data in ecology” are available on http://www.nceas.ucsb.edu/~liebhold/ecography/.)
• Dalle, S. P., H. López, D. Díaz, P. Legendre & C. Potvin. 2002. Spatial distribution and habitats of useful plants: an initial assessment for conservation on an indigenous territory, Panama. Biodiversity and Conservation 11: 637-667.
• Desdevises, Y., Morand, S., & P. Legendre. 2002. Evolution and determinants of host specificity in the genus Lamellodiscus (Monogenea). Biological Journal of the Linnean Society 77: 431-443.
• Desdevises, Y., S. Morand, O. Jousson & P. Legendre. 2002. Coevolution between Lamellodiscus (Monogenea: Diplectanidae) and Sparidae (Teleostei): the study of a complex host-parasite system. Evolution 56(12) 2459-2471.
• Dungan, J. L., J. N. Perry, M. R. T. Dale, P. Legendre, S. Citron-Pousty, M.-J. Fortin, A. Jakomulska, M. Miriti and M. S. Rosenberg. 2002. A balanced view of scaling in spatial statistical analysis. Ecography 25: 626-640.
  (PDFs of all papers of the Ecography special section “Integrating the statistical analysis of spatial data in ecology” are available on http://www.nceas.ucsb.edu/~liebhold/ecography/.)
• Durand, S., M. Le Bel, S. K. Juniper and P. Legendre. 2002. The use of video surveys, a Geographic Information System and sonar backscatter data to study faunal community dynamics at Juan de Fuca Ridge hydrothermal vents. Cahiers de Biologie Marine 43: 235-240.
• Grillet, M. E., P. Legendre & D. Borcard. 2002. Community structure of neotropical wetland insects in Northern Venezuela. I. Temporal and environmental factors. Archiv für Hydrobiologie 155: 413-436.
• Grillet, M. E., P. Legendre & D. Borcard. 2002. Community structure of neotropical wetland insects in Northern Venezuela. II. Habitat type and environmental factors. Archiv für Hydrobiologie 155: 437-453.
• He, F. and P. Legendre. 2002. Species diversity patterns derived from species-area models. Ecology 83(5): 1185-1198. (“Concept” section).
• Hewitt, J. E., S. F. Thrush, P. Legendre, V. J. Cummings & A. Norkko. 2002. Integrating heterogeneity across spatial scales: interactions between Atrina zealandica and benthic macrofauna. Marine Ecology Progress Series 239: 115-128.
• Hooper, E., R. Condit and P. Legendre. 2002. Responses of 20 native tree species to reforestation strategies for abandoned farmland in Panama. Ecological Applications 12(6): 1626-1641.
• Legendre, P., Y. Desdevises and E. Bazin. 2002. A statistical test for host-parasite coevolution. Systematic Biology 51(2): 217-234.
• Legendre, P., M. R. T. Dale, M.-J. Fortin, J. Gurevitch, M. Hohn and D. Myers. 2002. The consequences of spatial structure for the design and analysis of ecological field surveys. Ecography 25: 601-615.
  (PDFs of all papers of the Ecography special section “Integrating the statistical analysis of spatial data in ecology” are available on http://www.nceas.ucsb.edu/~liebhold/ecography/.)
• Legendre, P., K. E. Ellingsen, E. Bjørnbom & P. Casgrain. 2002. Acoustic seabed classification: improved statistical method. Canadian Journal of Fisheries and Aquatic Sciences 59 (7): 1085-1089.
  (La discussion sur “Acoustic seabed classification” comprend trois articles.)
  (The discussion on “Acoustic seabed classification” is made of three papers.)
• Legendre, P. and V. Makarenkov. 2002. Reconstruction of biogeographic and evolutionary networks using reticulograms. Systematic Biology 51(2): 199-216.
• Lobo, A., P. Legendre, J. L. González Rebollar, J. Carreras & J.-M. Ninot. 2002. Land cover classification at a regional scale in Iberia: separability in a multi-temporal and multi-spectral data set of satellite images. Pp. 348–353 in: Proceedings of the Symposium “Recent Advances in Quantitative Remote Sensing”, Auditori de Torrent, Spain, 16-20 September 2002.
• Makarenkov, V., & Legendre, P. 2002. Nonlinear redundancy analysis and canonical correspondence analysis based on polynomial regression. Ecology 83(4): 1146-1161.

2001

• Guay, J. C., D. Boisclair, M. Leclerc, M. Lapointe & P. Legendre. 2001. Science on the edge of spatial scales: a reply to the comment of Williams (2001). Canadian Journal of Fisheries and Aquatic Sciences 58: 2108-2111.
• Legendre, P. and E. Gallagher. 2001. Ecologically meaningful transformations for ordination of species data. Oecologia 129: 271-280. (Reprint available, © 2001 “Springer-Verlag”. The original publication is available on http://link.springer.de/)
• Makarenkov, V., E. Bazin & P. Legendre. 2001. T-REX – Software for reconstructing phylogenetic trees and reticulation networks. The multiple regression on distance matrices as a comparative method. Pp. 209-210 in: N. El-Mabrouk, T. Lengauer & D. Sankoff [Eds.], Currents in computational molecular biology 2001. (Proceedings of the RECOMB 2001 Conference, Montréal.) Les Publications CRM, Montréal.
• Makarenkov, V., Legendre, P. 2001. Optimal Variable Weighting for Ultrametric and Additive Trees and K-means Partitioning: Methods and Software. Journal of Classification 18: 245-271.

2000

• Avois, C., P. Legendre, S. Masson and B. Pinel-Alloul. 2000. Is the sampling strategy interfering with the study of spatial variability of zooplankton communities? Canadian Journal of Fisheries and Aquatic Sciences 57: 1940-1956.
• Bellehumeur, C., D. Marcotte & P. Legendre. 2000. Estimation of regionalized phenomena by geostatistical methods: lake acidity on the Canadian Shield. Environmental Geology 39: 211-220.
• Dutilleul, P., J. D. Stockwell, D. Frigon & P. Legendre. 2000. The Mantel test versus Pearson’s correlation analysis: assessment of the differences for biological and environmental studies. Journal of Agricultural, Biological and Environmental Statistics 5: 131-150.
• Guay, J.-C., D. Boisclair, D. Rioux, M. Leclerc, M. Lapointe & P. Legendre. 2000. Development and validation of numerical habitat models for juveniles of Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences 57: 2065-2075.
• Legendre, P. 2000. Comparison of permutation methods for the partial correlation and partial Mantel tests. Journal of Statistical Computation and Simulation 67: 37-73.
• Legendre, P. (Guest Editor) 2000. Special section on reticulate evolution. Journal of Classification 17: 153-195.

1999

• Anderson, M. J. & P. Legendre. 1999. An empirical comparison of permutation methods for tests of partial regression coefficients in a linear model. Journal of Statistical Computation and Simulation 62: 271-303.
• Lapointe, F.-J., G. Baron & P. Legendre. 1999. Encephalization, adaptation and evolution of Chiroptera: a statistical analysis with further evidence for bat monophyly. Brain, Behavior and Evolution 54: 119-126.
• Legendre, P. & M. J. Anderson. 1999. Distance-based redundancy analysis: testing multi-species responses in multi-factorial ecological experiments. Ecological Monographs 69 (1): 1-24.
• Legendre, P. & L. Legendre. 1999. Lexique anglais-français d'écologie numérique et de statistique. // English-French vocabulary of numerical ecology and statistics. Disponible sur / Available on http://numericalecology.com.

1998

• Bellehumeur, C. & P. Legendre. 1998. Multiscale sources of variation in ecological variables: modeling spatial dispersion, elaborating sampling designs. Landscape Ecology 13: 15–25.
• Tremblay, G., P. Legendre, J.-F. Doyon, R. Verdon & R. Schetagne. 1998. The use of polynomial regression analysis with indicator variables for interpretation of mercury in fish data. Biogeochemistry 40: 189-201.

1997

• Augustin, D., R. Galzin, P. Legendre & B. Salvat. 1997. Variation interannuelle des peuplements récifaux du récif-barrière de Tiahura (île de Moorea, Polynésie française). Oceanologica Acta 20: 743-756.
• Bellehumeur, C. & P. Legendre. 1997. Aggregation of Sampling Units: An Analytical Solution to Predict Variance. Geographical Analysis 29: 258-266.
• Bellehumeur, C., P. Legendre & D. Marcotte. 1997. Variance and spatial scales in a tropical rain forest: changing the size of sampling units. Plant Ecology 130: 89–98.
• Dufrêne, M. & P. Legendre. 1997. Species assemblages and indicator species: the need for a flexible asymmetrical approach. Ecological Monographs 67: 345-366.
• Gauthier, S., D. Boisclair & P. Legendre. 1997. Evaluation of a variable angle scanning method to estimate relative abundance and distribution of fish using a single-beam echosounder in shallow lakes. Journal of Fish Biology 50: 208-221.
• Grant, J., S. J. Turner, P. Legendre, T. M. Hume & R. G. Bell. 1997. Patterns of sediment reworking and transport over small spatial scales on an intertidal sandflat, Manukau Harbour, New Zealand. J. Exp. Mar. Biol. Ecol. 216: 33-50.
• He, F., P. Legendre & J. V. LaFrankie. 1997. Distribution patterns of tree species in a Malaysian tropical rain forest. Journal of Vegetation Science 8: 105-114.
• Hewitt, J. E., P. Legendre, B. H. McArdle, S. F. Thrush, C. Bellehumeur & S. M. Lawrie. 1997. Identifying relationships between adult and juvenile bivalves at different spatial scales. J. Exp. Mar. Biol. Ecol. 216: 77-98.
• Hines, A. H., R. B. Whitlatch, S. F. Thrush, J. E. Hewitt, V. J. Cummings, P. K. Dayton & P. Legendre. 1997. Nonlinear foraging response of a large marine predator to benthic prey: eagle ray pits and bivalves in a New Zealand sandflat. J. Exp. Mar. Biol. Ecol. 216: 191-210.
• Lanctôt, J.-L., P. Legendre & B. Salvat. 1997. How do coral reef Gastropods feel about nuclear testing? A long-term study of the effects of man-made perturbations. Oceanologica Acta 20: 243-257.
• Legendre, P., R. Galzin & M. L. Harmelin-Vivien. 1997. Relating behavior to habitat: solutions to the fourth-corner problem. Ecology 78: 547-562.
• Legendre, P. & B.H. McArdle. 1997. Comparison of surfaces. Oceanologica Acta 20: 27-41.
• Legendre, P., S. F. Thrush, V. J. Cummings, P. K. Dayton, J. Grant, J. E. Hewitt, A. H. Hines, B. H. McArdle, R. D. Pridmore, D. C. Schneider, S. J. Turner, R. B. Whitlatch & M. R. Wilkinson. 1997. Spatial structure of bivalves in a sandflat: scale and generating processes. J. Exp. Mar. Biol. Ecol. 216: 99-128.
• Renaud, J. & P. Legendre. 1997. Nouveaux immigrants et localisation résidentielle. P. 103-127 in: D. Meintel, V. Piché, D. Juteau et S. Fortin (éds.) Le quartier Côte-des-Neiges à Montréal - Les interfaces de la pluriethnicité. L’Harmattan, Paris.
• Thrush, S. F., V. J. Cummings, P. K. Dayton, R. Ford, J. Grant, J. E. Hewitt, A. H. Hines, S. M. Lawrie, R. D. Pridmore, P. Legendre, B. H. McArdle, D. C. Schneider, S. J. Turner, R. B. Whitlatch & M. R. Wilkinson. 1997. Matching the outcome of small-scale density manipulation experiments with larger scale patterns: an example of bivalve adult/juvenile interactions. J. Exp. Mar. Biol. Ecol. 216: 153-169.
• Thrush, S. F., R. D. Pridmore, R. G. Bell, V. J. Cummings, P. K. Dayton, R. Ford, J. Grant, M. O. Green, J. E. Hewitt, A. H. Hines, T. M. Hume, S. M. Lawrie, P. Legendre, B. H. McArdle, D. Morrisey, D. C. Schneider, S. J. Turner, R. A. Walters, R. B. Whitlatch & M. R. Wilkinson. 1997. The sandflat habitat: scaling from experiments to conclusions. J. Exp. Mar. Biol. Ecol. 216: 1-9.
• Thrush, S. F., D. C. Schneider, P. Legendre, R. B. Whitlatch, P. K. Dayton, J. E. Hewitt, A. H. Hines, V. J. Cummings, S. M. Lawrie, J. Grant, R. D. Pridmore, S. J. Turner & B. H. McArdle. 1997. Scaling-up from experiments to complex ecological systems: where to next? J. Exp. Mar. Biol. Ecol. 216: 243-254.

1996

• Casgrain, P., P. Legendre, J.-L. Sixou & C. Mouton. 1996. A graph-theory method to establish serological relationships within a bacterial taxon, with example from Porphyromonas gingivalis. Journal of Microbiological Methods 26: 225-236.
• He, F. and P. Legendre. 1996. On species-area relations. The American Naturalist 148(5): 719-737.
• He, F., P. Legendre & J. V. LaFrankie. 1996. Spatial pattern of diversity in a tropical rain forest of Malaysia. Journal of Biogeography 23: 57-74.
• Lapointe, F.-J. & P. Legendre. 1996. Evolution of the marsupial brain: Does it reflect the evolution of behavior? Chapter 11, pp. 187-212 in: Animals and their environment – A tribute to Paul Pirlot (T. Cabana, editor). Éditions Orbis Publishing, Frelighsburg, Canada.
• Le Boulengé, É., P. Legendre, C. de le Court, P. Le Boulengé-Nguyen & M. Languy. 1996. Microgeographic morphological differentiation in muskrats. Journal of Mammalogy 77: 684-701.
• Mesplé, F., M. Troussellier, C. Casellas and P. Legendre. 1996. Evaluation of simple statistical criteria to qualify a simulation. Ecological Modelling 88: 9-18.
• Morand, S., P. Legendre, S. L. Gardner & J.-P. Hugot. 1996. Body size evolution of oxyurid (Nematoda) parasites: the role of hosts. Oecologia 107: 274-282.
• Thomson, J. D., G. Weiblen, B. A. Thomson, S. Alfaro & P. Legendre. 1996. Untangling multiple factors in spatial distributions: lilies, gophers, and rocks. Ecology 77: 1698-1715. (“Concept” section.)

1995

• Cadoret, L., P. Legendre, M. Adjeroud & R. Galzin. 1995. Répartition spatiale des Chaetodontidae dans différents secteurs récifaux de l’île de Moorea, Polynésie française. Écoscience 2: 129-140.
• Lapointe, F.-J. & P. Legendre. 1995. Comparison tests for dendrograms: a comparative evaluation. Journal of Classification 12: 265-282.
• Legendre, P. & F.-J. Lapointe. 1995. Matching behavioral evolution to brain morphology. Brain, Behavior and Evolution 45: 110-121.
• Pinel-Alloul, B., T. Niyonsenga & P. Legendre. 1995. Spatial and environmental components of freshwater zooplankton structure. Écoscience 2: 1-19.

1994

• Borcard, D. & P. Legendre. 1994. Environmental control and spatial structure in ecological communities: an example using Oribatid mites (Acari, Oribatei). Environmental and Ecological Statistics 1: 37-61.
• De Puytorac, P., J. Grain & P. Legendre. 1994. An attempt at reconstructing the phylogenetic tree of Ciliophora using parsimony methods. European Journal of Protistology 30: 1-17. https://doi.org/10.1016/s0932-4739(11)80193-8.
• He, F., P. Legendre, C. Bellehumeur & J. V. LaFrankie. 1994. Diversity pattern and spatial scale: a study of a tropical rain forest of Malaysia. Environmental and Ecological Statistics 1: 265-286.
• Lapointe, F.-J. & P. Legendre. 1994. A classification of pure malt Scotch whiskies. Applied Statistics 43: 237-257.
• Legendre, P., F.-J. Lapointe & P. Casgrain. 1994. Modeling brain evolution from behavior: a permutational regression approach. Evolution 48: 1487-1499.
• Magnan, P., M. A. Rodríguez, P. Legendre and S. Lacasse. 1994. Dietary variation in a freshwater fish species: relative contribution of biotic interactions, abiotic factors, and spatial structure. Can. J. Fish. Aquat. Sci. 51: 2856-2865.
• Roy, R., P. Legendre, R. Knowles & M.N. Charlton. 1994. Denitrification and methane production in sediment of Hamilton Harbour (Canada). Microbial Ecology 27: 123-141.

1993

• Cattaneo, A., P. Legendre & T. Niyonsenga. 1993. Exploring periphyton unpredictability. Journal of the North American Benthological Society 12: 418-430.
• Dutilleul, P. & P. Legendre. 1993. Spatial heterogeneity against heteroscedasticity: an ecological paradigm versus a statistical concept. Oikos 66: 152-171.
• Fromentin, J.-M., F. Ibanez & P. Legendre. 1993. A phytosociological method for interpreting plankton data. Mar. Ecol. Progr. Ser. 93: 285-306.
• Legendre, P. 1993. Real data are messy Statistics and Computing 3: 197-199.
• Legendre, P. 1993. Spatial autocorrelation: Trouble or new paradigm? Ecology 74: 1659-1673 (Part of a Special Feature).
• Planes, S., A. Lefèvre, P. Legendre & R. Galzin. 1993. Spatio-temporal variability in fish recruitment to a coral reef (Moorea, French Polynesia). Coral Reefs 12: 105-113.

1992

• Bach, P., P. Legendre, M. Amanieu & G. Lasserre. 1992. Strategy of eel (Anguilla anguilla L.) exploitation in the Thau lagoon. Estuarine, Coastal and Shelf Science 35: 55-73.
• Borcard, D., P. Legendre & P. Drapeau. 1992. Partialling out the spatial component of ecological variation. Ecology 73: 1045-1055.
• Bourgault, G., D. Marcotte & P. Legendre. 1992. The multivariate (co)variogram as a spatial weighting function in classification methods. Mathematical Geology 24: 463-478.
• Demers, S., J. Kim, P. Legendre & L. Legendre. 1992. Analyzing multivariate flow cytometric data in aquatic sciences. Cytometry 13: 291-298.
• Dutilleul, P. & P. Legendre. 1992. Lack of robustness in two tests of normality against autocorrelation in sample data. J. Statist. Comput. Simul. 42: 79-91.
• Élie, D. & P. Legendre. 1992. Autocorrélation spatiale et déplacement de la criminalité. Criminologie 25: 139-154.
• Lapointe, F.-J. & P. Legendre. 1992. A statistical framework to test the consensus among additive trees (cladograms). Syst. Biol. 41: 158-171.
• Lapointe, F.-J. & P. Legendre. 1992. Statistical significance of the matrix correlation coefficient for comparing independent phylogenetic trees. Syst. Biol. 41: 378-384.
• Leduc, A., P. Drapeau, Y. Bergeron & P. Legendre. 1992. Study of spatial components of forest cover using partial Mantel tests and path analysis. Journal of Vegetation Science 3: 69-78.
• Simard, Y., P. Legendre, G. Lavoie & D. Marcotte. 1992. Mapping, estimating biomass, and optimizing sampling programs for spatially autocorrelated data: Case study of the Northern Shrimp (Pandalus borealis). Can. J. Fish. Aquat. Sci. 49: 32-45.

1991

• Dufrêne, M. & P. Legendre. 1991. Geographic structure and potential ecological factors in Belgium. J. Biogeogr. 18: 257-266.
• Hudon, C., P. Legendre, A. Lavoie, J.-M. Dubois & G. Vigeant. 1991. Effets du climat et de l'hydrographie sur le recrutement du homard américain (Homarus americanus) dans le nord du golfe du Saint-Laurent. Pp. 161-177 in: Therriault, J.-C. [éd.] Le golfe du Saint-Laurent: petit océan ou grand estuaire? Publ. spéc. can. sci. halieut. aquat. 113 / Can. Spec. Publ. Fish. Aquat. Sci. 113.
• Jarry, V., G.-F. Frisoni & P. Legendre. 1991. Organisation spatiale et modélisation écologique d’un peuplement phytoplanctonique de lagune (étang de Thau, France). Oceanologica Acta 14: 473-488.
• Lapointe, F.-J. & P. Legendre. 1991. The generation of random ultrametric matrices representing dendrograms. Journal of Classification 8: 177-200.
• Legendre, P. & P. Dutilleul. 1991. Comments on Boyle’s Acidity and organic carbon in lake water: variability and estimation of means. Journal of Paleolimnology 6: 103-110.

1990

• Ardisson, P.-L., E. Bourget & P. Legendre. 1990. Multivariate approach to study species assemblages at large spatiotemporal scales: The community structure of the epibenthic fauna of the Estuary and Gulf of St. Lawrence. Can. J. Fish. Aquat. Sci. 47: 1364-1377.
• Lapointe, F.-J. & P. Legendre. 1990. A statistical framework to test the consensus of two nested classifications. Syst. Zool. 39: 1-13.
• Legendre, P. 1990. Quantitative methods and biogeographic analysis. Pp. 9-34 in: Garbary, D. J. & G. R. South (eds.) Evolutionary biogeography of the marine algae of the North Atlantic. NATO ASI Series, Vol. G 22. Springer-Verlag, Berlin.
• Legendre, P. & L. Legendre. 1990. Structure spatio-temporelle des variables en océanographie. Problèmes d'analyse numérique et méthodes d'analyse spatiale. Pp. 7-12 in: S. Frontier [éd.] Biométrie et océanographie. Société française de Biométrie, Actes de Colloques No 10.
• Legendre, P., N. L. Oden, R. R. Sokal, A. Vaudor & J. Kim. 1990.Approximate analysis of variance of spatially autocorrelated regional data.Journal of Classification 7: 53-75.
• Sokal, R. R., N. L. Oden, P. Legendre, M.-J. Fortin, J. Kim, B. A. Thomson, A. Vaudor, R. M. Harding & G. Barbujani. 1990. Genetics and language in European populations. American Naturalist 135: 157-175.

1989

• Amanieu, M., P. Legendre, M. Troussellier & G.-F. Frisoni. 1989. Le programme Écothau: théorie écologique et base de la modélisation. Oceanologica Acta 12: 189-199.
• Fortin, M.-J., P. Drapeau & P. Legendre. 1989. Spatial autocorrelation and sampling design in plant ecology. Vegetatio 83: 209-222.
• Legendre, P. & M.-J. Fortin. 1989. Spatial pattern and ecological analysis. Vegetatio 80: 107-138.
• Legendre, P., M. Troussellier, V. Jarry & M.-J. Fortin. 1989. Design for simultaneous sampling of ecological variables: from concepts to numerical solutions. Oikos 55: 30-42.
• Troussellier, M. & P. Legendre. 1989. Dynamics of fecal coliform and culturable heterotroph densities in an eutrophic ecosystem: stability of models and evolution of these bacterial groups. Microbial Ecology 17: 227-235.
• Sokal, R. R., N. L. Oden, P. Legendre, M.-J. Fortin, J. Kim & A. Vaudor. 1989. Genetic differences among language families in Europe. American Journal of Physical Anthropology 79: 489-502.

1988

• Legendre, P. & M. Troussellier. 1988. Aquatic heterotrophic bacteria: modeling in the presence of spatial autocorrelation. Limnology and Oceanography 33: 1055-1067.
• Ouimet, C. & P. Legendre. 1988. Practical aspects of modelling ecological phenomena using the cusp catastrophe. Ecological Modelling 42: 265-288.

1987

• Bell, M. A. & P. Legendre. 1987. Multicharacter chronological clustering in a sequence of fossil sticklebacks. Syst. Zool. 36: 52-61.
• Bölter, M., P. Legendre, J. De Leeuw, R. Park, P. Schwinghamer, S. E. Stevens & M. Troussellier. 1987. Numerical ecology: Developments for microbial ecology. Pp. 469-484 in: P. Legendre & L. Legendre [eds.] Developments in numerical ecology. NATO ASI series, Vol. G-14. Springer-Verlag, Berlin.
• Galzin, R. & P. Legendre. 1987. The fish communities of a coral reef transect. Pacific Science 41: 158-165.
• Hudon, C. & P. Legendre. 1987. The ecological implications of growth forms in epibenthic diatoms. Journal of Phycology 23: 434-441.
• Legendre, P. 1987. Constrained clustering. Pp. 289-307 in: P. Legendre & L. Legendre [eds.] Developments in numerical ecology. NATO ASI series, Vol. G-14. Springer-Verlag, Berlin.

1986

• Gower, J. C. & P. Legendre. 1986. Metric and Euclidean properties of dissimilarity coefficients. Journal of Classification 3: 5-48.
• Hudon, C., P. Fradette & P. Legendre. 1986. La répartition horizontale et verticale des larves de homard (Homarus americanus) autour des Iles-de-la-Madeleine, golfe du Saint-Laurent. Can. J. Fish. Aquat. Sci. 43: 2164-2176.
• Legendre, P. 1986. Reconstructing biogeographic history using phylogenetic-tree analysis of community structure. Syst. Zool. 35: 68-80.
• Legendre, P. 1986. Report on Nineteenth International Numerical Taxonomy Conference. Systematic Zoology 35: 135-139.

1985

• Legendre, P., S. Dallot & L. Legendre. 1985. Succession of species within a community: chronological clustering, with applications to marine and freshwater zooplankton. American Naturalist 125: 257-288.

1984

• De Puytorac, P., J. Grain, P. Legendre & J. Dévaux. 1984. Essai d'application de l'analyse phénétique à la classification du phylum des Ciliophora. Journal of Protozoology 31: 496-507.
• Legendre, P. 1984. Report on Seventeenth International Numerical Taxonomy Conference. Systematic Zoology 33: 117-121.
• Legendre, P. 1984. L'analyse des données en relation avec l'échantillonnage. Revue d'Entomologie du Québec 29: 86-100.
• Legendre, P., B. Baleux & M. Troussellier. 1984. Dynamics of pollution-indicator and heterotrophic bacteria in a sewage treatment lagoon. Appl. Environm. Microbiol. 48: 586-593.
• Legendre, P., D. Planas & M.-J. Auclair. 1984. Succession des communautés de gastéropodes dans deux milieux différant par leur degré d'eutrophisation. Can. J. Zool. 62: 2317-2327.
• Legendre, P., M. Troussellier & B. Baleux. 1984. Indices descriptifs pour l'étude de l'évolution des communautés bactériennes. 71-84 in: A. Bianchi [éd.] Bactériologie marine: Colloque international no 331. Editions du CNRS, Paris.
• Legendre, P. & V. Legendre. 1984. Postglacial dispersal of freshwater fishes in the Québec peninsula. Can. J. Fish. Aquat. Sci. 41: 1781-1802.

1983

• Hudon, C., E. Bourget & P. Legendre. 1983. An integrated study of the factors influencing the choice of the settling site of Balanus crenatus cyprid larvae. Can. J. Fish. Aquat. Sci. 40: 1186-1194.
• Legendre, L. & P. Legendre. 1983. Partitioning ordered variables into discrete states for discriminant analysis of ecological classifications. Can. J. Zool. 61: 1002-1010.

1982

• Fortin, N. & P. Legendre. 1982. Application de la cartographie écologique à la localisation environnementale d'un réseau routier. Naturaliste canadien 109: 661-670.
• Lamarche, A., P. Legendre & A. Chodorowski. 1982. Facteurs responsables de la distribution des gastéropodes dulcicoles dans le fleuve Saint-Laurent. Hydrobiologia 89: 61-76.
• St-Louis, N. & P. Legendre. 1982. A water quality index for lake beaches. Water Research 16: 945-948.

1981

• André, P., P. Legendre & P. P. Harper. 1981. La sélectivité de trois engins d’échantillonnage du benthos lacustre. Annales de Limnologie 17: 25-40.
• Legendre, L., M. Fréchette & P. Legendre. 1981. The contingency periodogram: a method of identifying rhythms in series on nonmetric ecological data. J. Ecol. 69: 965-979.
• Troussellier, M. & P. Legendre. 1981. A functional evenness index for microbial ecology. Microb. Ecol. 7: 283-296.

1980

• Legendre, P., F. Long & A. Beauvais. 1980. Typologie écologique d'un groupe de lacs du Moyen Nord québécois. Annales de Limnologie 16: 135-158

1979

• Legendre, P. 1979. Le protistologue et la taxinomie numérique. L'Année Biologique 18: 493-519.
• Pinel-Alloul, B., P. Legendre & E. Magnin. 1979. Zooplancton limnétique de 46 lacs et 17 rivières du territoire de la Baie de James. Can. J. Zool. 57: 1693-1709.

1978

• Legendre, P. & A. Beauvais. 1978. Niches et associations de poissons des lacs de la Radissonie québécoise. Naturaliste canadien 105: 137-158.
• Legendre, P., F. Long, R. Bergeron & J.-M. Levasseur. 1978. Inventaire aérien de la faune dans le Moyen Nord québécois. Can J. Zool. 56: 451-462.

1977

• Legendre, P. & A. Chodorowski. 1977. A generalization of Jaccard’s association coefficient for Q analysis of multi-state ecological data matrices. Ekologia Polska 25: 297-308.

1976

• Legendre, P. 1976. An appropriate space for clustering selected groups of Western North American Salmo. Syst. Zool. 25: 193-195.

1975

• Legendre, P. 1975. A field-trip microtechnique for studying fish leukocyte chromosomes. Can. J. Zool. 53: 1443-1446. https://doi.org/10.1139/z75-175
• Legendre, P. 1975. A posteriori weighting of descriptors. Taxon 24: 603-608.

1974

• Ahmad A., A. Chodorowski & P. Legendre. 1974. Studies on the effect of pollution on the diatom communities of St. Lawrence River near Montreal. 1. Physico-chemical and biological characterization of the two water masses (Ottawa and St. Lawrence rivers). Water Pollution Research in Canada 9: 135-141.

1972

• Legendre, P. 1972. The definition of systematic categories in biology. Taxon 21: 381-406.
• Legendre, P. & D. J. Rogers. 1972. Characters and clustering in taxonomy: a synthesis of two taximetric procedures. Taxon 21: 567-606.
• Legendre, P., C. B. Schreck & R. J. Behnke. 1972. Taximetric analysis of selected groups of western North American Salmo with respect to phylogenetic divergences. Syst. Zool. 21: 292-307.

1971

• Legendre, P. 1971. Circumscribing the concept of the genus. Taxon 20: 137-139.

1970

• Legendre, P. 1970. Comptage de vertèbres chez quelques cyprinidae du Québec et de l'Ontario. Naturaliste canadien 97: 325-329.
• Legendre, P. 1970. The bearing of Phoxinus (Cyprinidae) hybridity of the classification of its North American species. Can. J. Zool. 48: 1167-1177.

1969

• Legendre, P. & P. Vaillancourt. 1969. A mathematical model for the entities species and genus. Taxon 18: 245-252.
• Legendre, P. & D. M. Steven. 1969. Dénombrement des chromosomes chez quelques cyprins. Naturaliste canadien 96: 913-918.

1964

• Legendre, P. 1964. La faune du Saguenay-fjord. Travaux des Jeunes Scientifiques 1 (1) : 38–44.